Creates trellis of heatMaps to explore your screen.
By default nodes expects three columns to be present in order to reorder wells back into plates:
- barcode
- plateRow
- plateColumn
Supported microtiter plate formats:
6, 12, 24, 96, 384 and 1536. The viewer will try to make a guess about the proper plate dimension if not
all wells are present in the table (e.g. because outer rows are not used).
Image data:
Tables containing images allow visualization of the well images in the well detail view. Any cell of an image
data column will be visualized. So far the KNIME native PNG images are recognised, as well as the formats
provided by the Image Processing plugin.
Careful! the processing might take time and disk space. The best performance is achieved with the "Image
Reference" produced by the "Image File Linker" node of the image processing plugin.
Options
Popular Successors
Row Splitter (deprecated)6 %Table Writer5 %Excel Writer (XLS)5 %- Z-Primes (PC x NC)5 %
- Normalize Plates (POC)4 %
- Image Writer (Port)4 %
- Color Manager4 %
- Normalize Plates (B-Score)3 %
- Scatter Plot (legacy)3 %
- One-way ANOVA3 %
Expand Well Position2 %- Join Layout2 %
- Normalize Plates (NPI)2 %
- Column Filter2 %
- Conditional Box Plot (JavaScript)2 %
- Normalize Plates (Z-Score)2 %
- Pivot2 %
Excel Writer (XLS)2 %- GroupBy2 %
Column Rename2 %- Dose Response (R)2 %
- Nominal Value Row Filter2 %
- Interactive Histogram (legacy)2 %
- Image to Report (BIRT)2 %
CV1 %- R Plot1 %
- Image to Table1 %
Image Writer (Port)1 %CSV Writer1 %- Group Loop Start1 %
- Column Auto Type Cast1 %
Linear Correlation1 %Row Filter (deprecated)1 %- Constant Value Column1 %
- Distance Matrix Calculate1 %
- Heatmap (JavaScript)1 %
- Plate Row Converter< 1 %
Concatenate (Optional in)< 1 %- String Manipulation (Variable)< 1 %
- Conditional Box Plot (legacy)< 1 %
- HeatMap (JFreeChart)< 1 %
- Matlab Plot< 1 %
- Table to String< 1 %
- Table Writer< 1 %
- Rule-based Row Filter< 1 %
CASE Switch Data (Start)< 1 %- Image Output Widget (legacy)< 1 %
- Create Well Position< 1 %
- Expand Barcode< 1 %
- Range Splitter< 1 %
- Plate Heatmap Viewer< 1 %
- Image Writer (Table)< 1 %
- Hierarchical Cluster View< 1 %
- Random Forest Predictor< 1 %
- Concatenate< 1 %
Number To String< 1 %String To Number< 1 %- Domain Calculator< 1 %
- Filter Apply< 1 %
- HiLite Row Splitter< 1 %
- Interactive HiLite Collector< 1 %
- Nominal Value Row Splitter< 1 %
Joiner< 1 %- Subset Matcher< 1 %
- Sorter< 1 %
- String Manipulation< 1 %
- Renderer to Image< 1 %
- Scatter Matrix (legacy)< 1 %
- Interactive Table (legacy)< 1 %
- Molecule Type Cast< 1 %
- Math Formula< 1 %
- Excel Writer< 1 %
- Image Output (legacy)< 1 %
- Scatter Plot (JavaScript)< 1 %
- PNG Image to ImgPlus< 1 %
- Image Normalizer< 1 %
Python Script (1⇒1)< 1 %
Views
- Plate Heatmap Trellis
- Trellis containing all heatmaps representing the plates of the screen.
Mouse behaviour:
The heatmap trellis and the individual plate view support single selection and drag-selection.
Right click on a plate of the trellis opens an individual plate view. A right click on a well of the plate view opens an a well detail view.
Workflows
01_Visualization_of_screening_dataKNIME Hub- 06_Visualization_of_screening_data_2KNIME Hub
- HTS_workflowKNIME Hub
- HTS_workflowKNIME Hub
- HTS_workflowKNIME Hub
- Show all 9 workflows
Links
- No links available
Developers
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