Expand Well Position0 ×
HCS-Tools for KNIME version 3.1.200.v201807180901 by Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)
This node takes a string column containing well positions (like B3 or C14) and appends two integer columns named 'plateRow' and 'plateColumn' containing two integer coordinates of the wells (link 2 and 3 or 3 and 14). It handles well positions up to 1536 plate format.
Additional splitting characters (comma, colons, semicolons, underscore) between the row letter and the column number will be ignored.
Options
- Well Position
- The column which contains well positions encoded as B3 oc C14
- Convert Row Characters
- If enabled, the row character (e.g. B or C) will be converted automatically into a row number (e.g. 2 or 3)
- Delete Source Column
- If enabled, the selected column will be removed.
Input Ports
Output Ports
Best Friends (Incoming)
- Joiner (5) Manipulator
- Column Filter (2) ManipulatorStreamable
- GroupBy (2) Manipulator
- Pivoting (2) Manipulator
XLS Reader(2) SourceDeprecated- Expand Barcode (1) Manipulator
- Normalize Plates (Z-Score) (1) Manipulator
- File Reader (1) SourceStreamable
- Table Creator (1) Source
- String To Number (1) ManipulatorStreamable
- Constant Value Column (1) ManipulatorStreamable
- Missing Value Column Filter (1) Manipulator
- Row Filter (1) ManipulatorStreamable
- Reference Row Filter (1) Manipulator
- Sorter (1) Manipulator
- URL to File Path (0) ManipulatorStreamable
- Concatenate (0) ManipulatorStreamable
- Cross Joiner (0) Manipulator
- String Manipulation (0) ManipulatorStreamable
- String Replacer (0) ManipulatorStreamable
- Math Formula (0) ManipulatorStreamable
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Best Friends (Outgoing)
- Join Layout (4) Manipulator
- Plate Heatmap Viewer (4) Visualizer
- Joiner (4) Manipulator
- GroupBy (2) Manipulator
- String Manipulation (2) ManipulatorStreamable
- Cell Replacer (1) ManipulatorStreamable
- Constant Value Column (1) ManipulatorStreamable
- Column Filter (1) ManipulatorStreamable
- Column Rename (1) ManipulatorStreamable
- Rule Engine (1) PredictorStreamable
- Math Formula (1) ManipulatorStreamable
- Normalize Plates (Z-Score) (0) Manipulator
- Table Writer (0) Sink
- Auto-Binner (0) Manipulator
- Number To String (0) Manipulator
- String To Number (0) ManipulatorStreamable
- Row Splitter (0) ManipulatorStreamable
- Row Filter (0) ManipulatorStreamable
- Reference Row Filter (0) Manipulator
- Sorter (0) Manipulator
- RDKit Molecule Substructure Filter (0) Manipulator
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Workflows
Update Site
To use this node in KNIME, install HCS-Tools for KNIME from the following update site:
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