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02_​Metadata_​utilities_​for_​screening_​data

Add meta data to screening data with HCS-Tools

The workflow shows how to use the nodes from the HCS-Tools plugin to add metainformation provided by the plate barcode or a layout within an Excel file.

Add metadata to screening data with HCS-ToolsThe workflow shows how to use the nodes from the HCS-Tools plugin to add meta dataprovided by the plate barcode or a layout within an Excel file.REQUIRES: Installation of HCS-Tools Plugin (part of the community contribution) default column names used automatically in certain HCS-Tools nodes:- barcode, plateRow, plateColumnExtract meta data from barcode- select specific RegEx or let node guess the pattern - set custom RegEx pattern here: - KNIME->Preferences->KNIME->HCS-Tools->Barcode Patterns- Expand Well Position node generates columns plateRow and plateColumn - Create Well Position node creates string column Well PositionSEE ALSO: Create Well Position, Plate Row Converter, Load Layout Data fromimage analsys withCellProfiler split well intoplateRow and plateColumne.g. 'D07' =>'4' , '7'meta data extractmetadatafrom barcode add meta informationfrom Excel layout Table Reader Expand WellPosition Column Rename Expand Barcode Join Layout Add metadata to screening data with HCS-ToolsThe workflow shows how to use the nodes from the HCS-Tools plugin to add meta dataprovided by the plate barcode or a layout within an Excel file.REQUIRES: Installation of HCS-Tools Plugin (part of the community contribution) default column names used automatically in certain HCS-Tools nodes:- barcode, plateRow, plateColumnExtract meta data from barcode- select specific RegEx or let node guess the pattern - set custom RegEx pattern here: - KNIME->Preferences->KNIME->HCS-Tools->Barcode Patterns- Expand Well Position node generates columns plateRow and plateColumn - Create Well Position node creates string column Well PositionSEE ALSO: Create Well Position, Plate Row Converter, Load Layout Data fromimage analsys withCellProfiler split well intoplateRow and plateColumne.g. 'D07' =>'4' , '7'meta data extractmetadatafrom barcode add meta informationfrom Excel layout Table Reader Expand WellPosition Column Rename Expand Barcode Join Layout

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: tdsuser
Created at: 2016-07-13
On NodePit since: 2019-07-12
Last update: 2024-04-20
Created with KNIME version: v3.2.0
Tags: High-content screening

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