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Based on Extraction of spots in biological images using multiscale products , Jean-Christophe Olivo-Marin Pattern Recognition 35 . This plugin uses currently some GPL code form Icy. To change the threshold factors using flow variables, you have to change the (2 * (n + 1) - 1)th value of the scaleConfig array. For example if you want to change threshold factor 0, you have to change value (2 * (0 + 1) - 1) = 1 of the scaleConfig, or if you want to change threshold factor 2 you have to change the (2 * (2 + 1) - 1) = 5th value in the scaleConfig array.
Options
Popular Predecessors
- Gaussian Convolution12 %
- Splitter10 %
Column Rename7 %- Global Thresholder5 %
- Local Thresholding4 %
- Image Calculator4 %
- Anisotropic Diffusion3 %
- Image Normalizer3 %
- Inverter3 %
- Interactive Annotator3 %
- Image Reader3 %
- Median Filter3 %
- ImageJ Macro2 %
- Spot Detection2 %
- Read Images1 %
- Chunk Loop Start1 %
- Column Filter1 %
- Merger1 %
- Image Reader (Table)1 %
- Date/Time Shift (legacy)1 %
- RowID1 %
- PNG Image to ImgPlus1 %
- Data Row to Image1 %
- Image Converter1 %
- Grayscale Reconstruction1 %
- Maximum Finder1 %
- Labeling to RGB Img1 %
Loop End< 1 %- Constant Value Column< 1 %
- Row Filter< 1 %
Joiner< 1 %- Column Splitter< 1 %
- Rule Engine< 1 %
- Morphological Image Operations< 1 %
- GroupBy< 1 %
- Sorter< 1 %
- Parallel Chunk Start< 1 %
- Image Features< 1 %
- Quantile Filter< 1 %
- Image to DataRow< 1 %
- Image Cropper< 1 %
- Projector< 1 %
- Fill Holes< 1 %
- CLAHE< 1 %
- Image Resizer< 1 %
- Connected Component Analysis< 1 %
- Image to Labeling< 1 %
- Label Transformer< 1 %
- Ilastik Headless (Pixel classification)< 1 %
- Parameter Optimization Loop Start< 1 %
CASE Switch Data (Start)< 1 %- Labeling to Image< 1 %
- Don't Save Start< 1 %
Views
- Table Cell View
Workflows
01_Spot_DetectionKNIME Hub- 01_Spot_Detection modif KNIME Forum
- Convex HullKNIME Hub
- Count_Overlapping_Vesicles_8KNIME Forum
- yh2axKNIME Hub
Links
- No links available
Developers
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