ImageJ Macro

Applies ImageJ (http://rsbweb.nih.gov/ij/) macros to images.

Options

Snippets: There some predefined macros that can be selected and added to list of macros. The macros are applied in the order they have been added. The configuration of the macros can either be done 'user-friendly' through an interface or by typing the code directly. To use/write a custom macro just use the 'Pure Code'-filter. Note that not every macro-code is compatible with KNIME which can lead in some cases to an unexpected results.

Return result table entries as strings: If checked, the entries of ImageJ-Result table will be returned as String, else as Doubles.

Column Creation Mode: Mode how to handle the selected column. The processed column can be added to a new table, appended to the end of the table, or the old column can be replaced by the new result
Column Suffix: A suffix appended to the column name. If "Append" is not selected, it can be left empty.
Column Selection: Selection of the columns to be processed.

: Processed Images
: The ImageJ results table if available (e.g. using the "Analyze Particles"-macro).

Image Viewer: Another, possibly interactive, view on table cells. Displays the selected cells with their associated viewer if it exists. Available views are:
- XML
-- XML tree
- BigDataViewer
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- Image Viewer
-- This viewer renders the selected image-cell.
- Combined View
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- Histogram Viewer
-- This viewer shows the histogram of the currently selected image.
- Missing Value Viewer
-- An empty viewer that is shown when the input cell has no value to display.
- Labeling View
-- View on a labeling/segmentation

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v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: University of Konstanz

Plugin version: 0.11.7.v202307240918

On NodePit since: 2023-12-06

Last update: 2024-04-26

Tags: Streamable

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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