Ilastik Headless (Pixel classification)

This node executes Ilastik and process the given input images headless using a provided Ilastik pixel classification project file. Input images MUST have the sime dimension as in the learned Ilastik project, otherwise an Ilastik error may occur. Resulting images will have one channel for each class defined in ilastik representing the probability for each pixel to be part of the corresponding class (0-1). Please make sure the right path to the Ilastik installation is given in "Preferences -> KNIME -> Image Processing Plugin -> Ilastik -> Path to Ilastik installation".

Options

Path to Ilastik project file

The ilastik project to be executed.

TIFF bugfix

Should the XYT output of ilastik be converted to XYZC?

Memory / CPU limits

Maximum of memory and threads allowed for Ilastik alone.

Column Selection

Column containing the images to be processed.

Views

Image Viewer

Image Viewer

Workflows

• Monitoring nucleolar-nucleoplasmic protein shuttling in living cellsKNIME Hub
• Worm images_final_with workaroundNodePit Space
• yh2axKNIME Hub

Links

• No links available

Developers