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Worm images_​final_​with workaround

Take fluo max projections from here Node 84Node 85Node 86Node 87Node 88Node 89Node 91Optional:filter imagesto test classificationOptional:filter imagesfor trainingWrite imagesfor trainingin ilastikNode 112Pivot channelsMerge channelsNode 118Node 124Node 125Node 126Node 127Split by channelMax projectover ZBlurbrightfield channelMax projectover ZNode 158Average projectionover TimeNode 160Node 161Node 162Node 163Node 164Node 165Node 166Node 167Node 168Node 169Node 170Node 176Node 177Node 178Node 180Node 183Node 184Node 185Node 186Node 187Node 190Node 191Node 192Node 194Node 195Node 196Node 197Node 208Node 209Node 210Node 211Node 212Node 213Node 214Node 215Node 216Node 217Node 218Node 219Optionally filtersome positionsor time pointNode 221Take randomsampleNode 223Node 224Node 225Node 226Node 227Node 228Node 229Node 230Node 232Node 233Node 235Node 236Node 237Node 238Node 239Node 240Node 241Node 242Node 243Node 244Node 245Node 248End ofgroup loopNode 258Node 259Node 260Node 261Node 262Node 267Node 268Node 269Node 270Node 271Node 272Node 273Node 274Node 275Node 276Node 279Node 280Node 281Node 282Node 283Node 284Node 285Node 286Node 287Node 288Node 289Node 304Node 306Node 307Node 312Node 314Node 315Node 322Node 323Node 337 Select nd dataset Filter subset GroupBy String Manipulation String to URI String Manipulation String to URI Copy/Move Files Copy/Move Files Ilastik Headless(Pixel classification) Row Filter Row Filter Image Writer Parallel Chunk End Split andfilter z slices Image Viewer Pivoting Merger Joiner Image Viewer ParallelChunk Start Image Cropper Global Thresholder Connected ComponentAnalysis Labeling Filter Row Splitter GroupBy GaussianConvolution GroupBy Concatenate Image Viewer GroupBy Image Viewer Image Converter Joiner Image Calculator Joiner MorphologicalImage Operations StructuringElement Creator MorphologicalImage Operations Joiner Joiner Straighten Image Projector Dimension Cleaner Row Splitter Concatenate Dimension Extender Image Viewer Image Cropper FeatureCalculator (BETA) Interactive Table Image Properties Split CollectionColumn String Manipulation Chunk Loop Start Table Rowto Variable Loop End Joiner Joiner Flip horizontally(workaround) Image Properties Split CollectionColumn Column Rename Joiner GroupBy Joiner Math Formula Set Image Metadata GroupBy Image Viewer Row Filter Row Filter Row Sampling Image Viewer Image Viewer FeatureCalculator (BETA) Group Loop Start Sorter Row Filter Loop End GroupBy RowID Image Viewer RowID Labeling to Image Image Writer Image Writer Image Converter Image Resizer Group Loop Start Loop End GroupBy Set Image Metadata Image Viewer Group Loop Start Loop End Read stk filesand crop IF Switch Empty Table Switch End IF Image Writer String Manipulation Image Cropper String Manipulation Math Formula Table Creator Cross Joiner Math Formula Chunk Loop Start Table Rowto Variable Loop End Image Generator Loop End Table Row ToVariable Loop Start Double To Int Joiner RowID ConstantValue Column FeatureCalculator (BETA) Group Loop Start R View (Table) Image To Table Loop End Table Writer Don't Save Start Image Viewer Table Reader Column Splitter CSV Writer Workaround for bugin GroupBy node Cache Math Formula Take fluo max projections from here Node 84Node 85Node 86Node 87Node 88Node 89Node 91Optional:filter imagesto test classificationOptional:filter imagesfor trainingWrite imagesfor trainingin ilastikNode 112Pivot channelsMerge channelsNode 118Node 124Node 125Node 126Node 127Split by channelMax projectover ZBlurbrightfield channelMax projectover ZNode 158Average projectionover TimeNode 160Node 161Node 162Node 163Node 164Node 165Node 166Node 167Node 168Node 169Node 170Node 176Node 177Node 178Node 180Node 183Node 184Node 185Node 186Node 187Node 190Node 191Node 192Node 194Node 195Node 196Node 197Node 208Node 209Node 210Node 211Node 212Node 213Node 214Node 215Node 216Node 217Node 218Node 219Optionally filtersome positionsor time pointNode 221Take randomsampleNode 223Node 224Node 225Node 226Node 227Node 228Node 229Node 230Node 232Node 233Node 235Node 236Node 237Node 238Node 239Node 240Node 241Node 242Node 243Node 244Node 245Node 248End ofgroup loopNode 258Node 259Node 260Node 261Node 262Node 267Node 268Node 269Node 270Node 271Node 272Node 273Node 274Node 275Node 276Node 279Node 280Node 281Node 282Node 283Node 284Node 285Node 286Node 287Node 288Node 289Node 304Node 306Node 307Node 312Node 314Node 315Node 322Node 323Node 337Select nd dataset Filter subset GroupBy String Manipulation String to URI String Manipulation String to URI Copy/Move Files Copy/Move Files Ilastik Headless(Pixel classification) Row Filter Row Filter Image Writer Parallel Chunk End Split andfilter z slices Image Viewer Pivoting Merger Joiner Image Viewer ParallelChunk Start Image Cropper Global Thresholder Connected ComponentAnalysis Labeling Filter Row Splitter GroupBy GaussianConvolution GroupBy Concatenate Image Viewer GroupBy Image Viewer Image Converter Joiner Image Calculator Joiner MorphologicalImage Operations StructuringElement Creator MorphologicalImage Operations Joiner Joiner Straighten Image Projector Dimension Cleaner Row Splitter Concatenate Dimension Extender Image Viewer Image Cropper FeatureCalculator (BETA) Interactive Table Image Properties Split CollectionColumn String Manipulation Chunk Loop Start Table Rowto Variable Loop End Joiner Joiner Flip horizontally(workaround) Image Properties Split CollectionColumn Column Rename Joiner GroupBy Joiner Math Formula Set Image Metadata GroupBy Image Viewer Row Filter Row Filter Row Sampling Image Viewer Image Viewer FeatureCalculator (BETA) Group Loop Start Sorter Row Filter Loop End GroupBy RowID Image Viewer RowID Labeling to Image Image Writer Image Writer Image Converter Image Resizer Group Loop Start Loop End GroupBy Set Image Metadata Image Viewer Group Loop Start Loop End Read stk filesand crop IF Switch Empty Table Switch End IF Image Writer String Manipulation Image Cropper String Manipulation Math Formula Table Creator Cross Joiner Math Formula Chunk Loop Start Table Rowto Variable Loop End Image Generator Loop End Table Row ToVariable Loop Start Double To Int Joiner RowID ConstantValue Column FeatureCalculator (BETA) Group Loop Start R View (Table) Image To Table Loop End Table Writer Don't Save Start Image Viewer Table Reader Column Splitter CSV Writer Workaround for bugin GroupBy node Cache Math Formula

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: yannickhauser
Created at: 2016-11-07
On NodePit since: 2019-07-16
Last update: 2024-04-20
Created with KNIME version: v3.7.2
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