00_bindingsiteexploration
Showcase Study: Exploring Binding Sites in PDB Structures
Thsi is a showcase study on how to explore target protein structures on-the-fly with the KNIME nodes for the ProteinsPlus web server (https://proteins.plus). To use the herein applied and additional tools in your workflows, see the links below.
Nodes
- Column Filter476 ×
- CASE Switch End225 ×
- Empty Table Switch178 ×
- Row Splitter150 ×
- RowID102 ×
- Java Snippet (simple)97 ×
- Wait...96 ×
- Sorter68 ×
- Chunk Loop Start58 ×
- Loop End58 ×
- Recursive Loop End48 ×
- Recursive Loop Start48 ×
- Column Resorter45 ×
- Cell Splitter43 ×
- IF Switch (Flow Variable Value)42 ×
- Java Snippet41 ×
- GET Request38 ×
- Java Snippet Row Splitter34 ×
- Row Filter34 ×
- String Manipulation32 ×
- JSON to Table28 ×
- List Box Input27 ×
- String Replacer22 ×
- GroupBy17 ×
- Add Empty Rows16 ×
- Table Row to Variable16 ×
- POST Request14 ×
- String to JSON14 ×
- Ungroup14 ×
- Binary Objects to Strings13 ×
- Extract Column Header13 ×
- Insert Column Header13 ×
- Concatenate13 ×
- Transpose13 ×
- Column Renamer11 ×
- Rule-based Row Filter11 ×
- Missing Value9 ×
- String Input8 ×
- Column Appender7 ×
- Table Column to Variable7 ×
- Color Manager6 ×
- Column Combiner6 ×
- Column Rename6 ×
- Constant Value Column6 ×
- Reference Row Filter6 ×
- String Configuration6 ×
- Unpivoting6 ×
- JSON Path4 ×
- Joiner4 ×
- Cell Splitter By Position3 ×
- PDB Connector Query Builder3 ×
- PDB Connector Query Executor3 ×
- PDB Loader3 ×
- String To Number3 ×
Cell Splitter2 ×- Fingerprints2 ×
- Table Creator2 ×
- Table Row to Variable2 ×
- Table View (JavaScript)2 ×
- Fingerprint Similarity1 ×
- Image Writer (Port)1 ×
- Molecule Type Cast1 ×
- Table To Image1 ×
Extensions
- FeatureKNIME Base Chemistry Types & Nodes
- FeatureKNIME Base nodes
- FeatureKNIME Basic File System Connectors
- FeatureKNIME JavaScript Views
- FeatureKNIME Javasnippet
- Show all 11 modules
Links
- ProteinsPlus KNIME Nodeshub.knime.com/proteinsplus/spaces/Public/ProteinsPlus
- ProteinsPlus - StructureProfilerhub.knime.com/s/f1fdxpvRrAnF3KR3
- ProteinsPlus - DoGSite3hub.knime.com/s/2RIumKR023dVH-IU
- ProteinsPlus - SIENAhub.knime.com/s/jdRZxxBi2TLIk-rA
- ProteinsPlus - PoseEdithub.knime.com/s/RMtymc-sclgg9znX
- Show all 12 links