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  8. 00_bindingsiteexploration00_bindingsiteexploration
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00_​bindingsiteexploration

Showcase Study: Exploring Binding Sites in PDB Structures

Thsi is a showcase study on how to explore target protein structures on-the-fly with the KNIME nodes for the ProteinsPlus web server (https://proteins.plus). To use the herein applied and additional tools in your workflows, see the links below.

Nodes

  • Column Filter476 ×
  • CASE Switch End225 ×
  • Empty Table Switch178 ×
  • Row Splitter150 ×
  • RowID102 ×
  • Show all 65 nodes

Extensions

  • FeatureKNIME Base Chemistry Types & Nodes
  • FeatureKNIME Base nodes
  • FeatureKNIME Basic File System Connectors
  • FeatureKNIME JavaScript Views
  • FeatureKNIME Javasnippet
  • Show all 11 modules

Links

  • ProteinsPlus KNIME Nodes
    hub.knime.com/proteinsplus/spaces/Public/ProteinsPlus
  • ProteinsPlus - StructureProfiler
    hub.knime.com/s/f1fdxpvRrAnF3KR3
  • ProteinsPlus - DoGSite3
    hub.knime.com/s/2RIumKR023dVH-IU
  • ProteinsPlus - SIENA
    hub.knime.com/s/jdRZxxBi2TLIk-rA
  • ProteinsPlus - PoseEdit
    hub.knime.com/s/RMtymc-sclgg9znX
  • Show all 12 links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: cehrt
Created at: 2022-06-19
On NodePit since: 2025-03-16
Last update: 2025-05-07
Created with KNIME version: v5.2.3

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