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PDB Connector Query Executor

Vernalis PDB Connector KNIME nodes package version 1.28.2.v202101281353 by Vernalis (R&D), UK

This node provides access to the RCSB PDB advanced query webservice, running queries which have been generated using the 'PDB Connector Query Builder' node and optionally 'PDB Connector Combine Queries' node

This node was developed by Vernalis Research (Cambridge, UK) . For feedback and more information, please contact knime@vernalis.com

Options

Return Type
The type of entity to return
Scoring Strategy
The scoring strategy to use. Not all strategies make logical sense for all queries.
Page Size
The number of hits to retrieve with each network call. Larger values will use more memory during node execution, but result in fewer calls to the remote webservice
Include JSON in output
Should the raw JSON response from the webservice call be included in the output table

Input Ports

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An advanced query

Output Ports

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The query results and scores

Workflows

Installation

To use this node in KNIME, install Vernalis KNIME Nodes from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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