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BaselineFilter

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Removes the baseline from profile spectra using a top-hat filter.

Web Documentation for BaselineFilter

Options

version
Version of the tool that generated this parameters file.
struc_elem_length
Length of the structuring element (should be wider than maximal peak width - see documentation).
struc_elem_unit
Unit of 'struc_elem_length' parameter.
method
The name of the morphological filter to be applied. If you are unsure, use the default.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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input raw data file [mzML]

Output Ports

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output raw data file [mzML]

Views

BaselineFilter Std Output
The text sent to standard out during the execution of BaselineFilter.
BaselineFilter Error Output
The text sent to standard error during the execution of BaselineFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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