Icon

LCMS Introduction

Liquid chromatography-coupled mass-spectrometry introduction

Load mass spectra, process (e.g. filter) them "in-file", then convert them to tables, and visualize them.

This workflow demonstrates basic loading, processing, converting and visualizing mass-spectrometry experiments (in mzML format). For more information see the workflow metadata. Find it here: View -> Description If using own data, you can configure the nodeand set the path. Example data is stored in theworkflow data path and referenced already. Caution: The 3D View shouldmainly be used for checkingfiltered data or interesting areas/excerpts. Load mzMLsome filteringof peaksto KNIME table3D View Input File BaselineFilter FileToTable MS Map Viewer This workflow demonstrates basic loading, processing, converting and visualizing mass-spectrometry experiments (in mzML format). For more information see the workflow metadata. Find it here: View -> Description If using own data, you can configure the nodeand set the path. Example data is stored in theworkflow data path and referenced already. Caution: The 3D View shouldmainly be used for checkingfiltered data or interesting areas/excerpts. Load mzMLsome filteringof peaksto KNIME table3D ViewInput File BaselineFilter FileToTable MS Map Viewer

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: pfeuffer
Created at: 2021-03-22
On NodePit since: 2021-10-20
Last update: 2024-12-21
Created with KNIME version: v4.4.1
Tags: mass spectrometryOpenMSvisualizationintroduction

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!