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Mass-spec. Bokeh Server

Liquid chromatography-coupled mass-spectrometry introduction

Load mass spectra as tables, filter them and visualize them in different ways.

This workflow demonstrates basic loading of mass-spectrometry experiments (in mzML format) and presenting it with a Bokeh server application (python). For more information see the workflow metadata. Find it here: View -> Description Configure and set the path if using own data.Potential input data can be found under theView -> Description -> Links Remember to stop the server when you arefinished, otherwise it will continue running inthe background. Requires a python (conda)environment with pyopenms, bokeh,datashader and holoviews 3D View with BokehLoad mzMLsome filteringof peaks MS Viewer Input File BaselineFilter This workflow demonstrates basic loading of mass-spectrometry experiments (in mzML format) and presenting it with a Bokeh server application (python). For more information see the workflow metadata. Find it here: View -> Description Configure and set the path if using own data.Potential input data can be found under theView -> Description -> Links Remember to stop the server when you arefinished, otherwise it will continue running inthe background. Requires a python (conda)environment with pyopenms, bokeh,datashader and holoviews 3D View with BokehLoad mzMLsome filteringof peaksMS Viewer Input File BaselineFilter

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: pfeuffer
Created at: 2021-03-22
On NodePit since: 2021-09-13
Last update: 2024-04-26
Created with KNIME version: v4.3.2
Tags: mass spectrometryOpenMSvisualizationintroduction

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