SortBam

Sort alignments by leftmost coordinates or by name.

Web Documentation for SortBam

Options

sort_by_name
Sort by query name instead of position.
compression
Compression level, from 0 to 9 [default: -1, disables compression]

Input Ports

Icon
Input BAM file. [bam]

Output Ports

Icon
Output BAM file. [bam]

Views

SortBam Std Output
The text sent to standard out during the execution of SortBam.
SortBam Error Output
The text sent to standard error during the execution of SortBam. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Further Links

Developers

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