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SortBam

Generic Workflow Nodes for KNIME: NgsToolbox version 0.1.0.202003122006 by Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Sort alignments by leftmost coordinates or by name.

Web Documentation for SortBam

Options

sort_by_name
Sort by query name instead of position.
compression
Compression level, from 0 to 9 [default: -1, disables compression]

Input Ports

Icon
Input BAM file. [bam]

Output Ports

Icon
Output BAM file. [bam]

Views

SortBam Std Output
The text sent to standard out during the execution of SortBam.
SortBam Error Output
The text sent to standard error during the execution of SortBam. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install NgsToolbox from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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