SamtoolsMPileup

samtools mpileup | bcftools -bvcg

Web Documentation for SamtoolsMPileup

Options

per_sample_depth
Per sample read depth.

Input Ports

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Input BAM file. [bam]
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Input Reference file. [fasta,fa,opt.]

Output Ports

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Output BCF file. [bcf]

Views

SamtoolsMPileup Std Output
The text sent to standard out during the execution of SamtoolsMPileup.
SamtoolsMPileup Error Output
The text sent to standard error during the execution of SamtoolsMPileup. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Links

Developers

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