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Bowtie2AlignerPE

Generic Workflow Nodes for KNIME: NgsToolbox version 0.1.0.201910311521 by Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Options

minins
minimum insert size for paired-end alignment
maxins
maximum insert size for paired-end alignment
mode
Alignment mode.
threads
Number of threads to use.

Input Ports

Input Bowtie index. [bt2]
Left reads files. [fasta,fa,fastq,fq]
Right reads file. [fasta,fa,fastq,fq]

Output Ports

Output SAM file. [sam]

Views

Bowtie2AlignerPE Std Output
The text sent to standard out during the execution of Bowtie2AlignerPE.
Bowtie2AlignerPE Error Output
The text sent to standard error during the execution of Bowtie2AlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install NgsToolbox from the following update site:

KNIME 4.1
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Developers

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