Bowtie2AlignerPE

Options

minins
minimum insert size for paired-end alignment
maxins
maximum insert size for paired-end alignment
mode
Alignment mode.
threads
Number of threads to use.

Input Ports

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Input Bowtie index. [bt2]
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Left reads files. [fasta,fa,fastq,fq]
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Right reads file. [fasta,fa,fastq,fq]

Output Ports

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Output SAM file. [sam]

Views

Bowtie2AlignerPE Std Output
The text sent to standard out during the execution of Bowtie2AlignerPE.
Bowtie2AlignerPE Error Output
The text sent to standard error during the execution of Bowtie2AlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

  • No workflows found

Further Links

Developers

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