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Bowtie2AlignerPE

bowtie2

Web Documentation for Bowtie2AlignerPE

Options

minins: minimum insert size for paired-end alignment
maxins: maximum insert size for paired-end alignment
mode: Alignment mode.
threads: Number of threads to use.

Input Ports

: Input Bowtie index. [bt2]
: Left reads files. [fasta,fa,fastq,fq]
: Right reads file. [fasta,fa,fastq,fq]

Output Ports

: Output SAM file. [sam]

Popular Predecessors

Popular Successors

Views

Bowtie2AlignerPE Std Output: The text sent to standard out during the execution of Bowtie2AlignerPE.
Bowtie2AlignerPE Error Output: The text sent to standard error during the execution of Bowtie2AlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Developers

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Installation

To use this node in KNIME, install the extension NgsToolbox from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Plugin version: 0.1.0.202003122006

On NodePit since: 2022-12-06

Last update: 2024-12-23

KNIME versions: From v3.6 to v4.7

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