Icon

BS-Seq Analysis Workflow

3-letter Mapping SNP and Methylation Level Calling 4-letter Alignment Alphabet Reduction CallingC -> TG -> AC -> TG -> ABackwardStrandLocal pairwise realignmentOUTPUT: SNPsOUTPUT:Methylation LevelsForwardStrandINPUT: Right Reads INPUT: Left ReadsINPUT: Reference FileMerger FileMerger FileMerger Casbar Four2three Four2three Four2three Four2three Razers3 Bisar File Viewer File Viewer Razers3 Sort by Position Sort by Name Input File Input File Input File 3-letter Mapping SNP and Methylation Level Calling 4-letter Alignment Alphabet Reduction CallingC -> TG -> AC -> TG -> ABackwardStrandLocal pairwise realignmentOUTPUT: SNPsOUTPUT:Methylation LevelsForwardStrandINPUT: Right Reads INPUT: Left ReadsINPUT: Reference FileMerger FileMerger FileMerger Casbar Four2three Four2three Four2three Four2three Razers3 Bisar File Viewer File Viewer Razers3 Sort by Position Sort by Name Input File Input File Input File

Nodes

Extensions

  • No modules found

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: sabrina7
Created at: 2014-04-30
On NodePit since: 2018-06-16
Last update: 2024-09-07
Created with KNIME version: v3.1.1

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!