Four2three

This program converts four-letter sequences into three-letter sequences for bisulfite sequence analysis.

Web Documentation for Four2three

Options

version-check
Turn this option off to disable version update notifications of the application.
ga-conversion
Convert Gs to As, instead of Cs to Ts.
quiet
Set verbosity to a minimum.
verbose
Enable verbose output.
very-verbose
Enable very verbose output.

Input Ports

Icon
A sequence file containing reads or genome. [fq,fq.bgzf,fq.gz,fastq,fastq.bgzf,fastq.gz,fa,fa.bgzf,fa.gz,fasta,fasta.bgzf,fasta.gz,faa,faa.bgzf,faa.gz,ffn,ffn.bgzf,ffn.gz,fna,fna.bgzf,fna.gz,frn,frn.bgzf,frn.gz,embl,embl.bgzf,embl.gz,gbk,gbk.bgzf,gbk.gz,raw,raw.bgzf,raw.gz,sam,sam.bgzf,sam.gz,bam]

Output Ports

Icon
Name of output file. [fq,fq.bgzf,fq.gz,fastq,fastq.bgzf,fastq.gz,fa,fa.bgzf,fa.gz,fasta,fasta.bgzf,fasta.gz,faa,faa.bgzf,faa.gz,ffn,ffn.bgzf,ffn.gz,fna,fna.bgzf,fna.gz,frn,frn.bgzf,frn.gz,raw,raw.bgzf,raw.gz,sam,sam.bgzf,sam.gz,bam]

Popular Predecessors

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Four2three Std Output
The text sent to standard out during the execution of Four2three.
Four2three Error Output
The text sent to standard error during the execution of Four2three. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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