This node adds missing hydrogens to CDK molecules and forces all hydrogens to be implicit. Stereochemistry is converted onto non-terminal bonds.
Options
Popular Predecessors
- Molecule Properties10 %
- MolConverter7 %
Row Filter (deprecated)4 %- Molecule to CDK4 %
- 2D Coordinates4 %
Table Reader4 %- RDKit To Molecule4 %
- MarvinSketch3 %
- ChemSpider3 %
- Generate 2D Coordinates3 %
- Symmetry2 %
- Load SD-Files (SDF)2 %
- Connectivity2 %
- 3D Coordinates2 %
- Substructure Search2 %
- Structure Sketcher2 %
- RDKit Kekulizer2 %
- Table Creator2 %
Column Rename2 %- SDF Reader2 %
- CDK to Molecule2 %
File Reader2 %- Element Filter2 %
- Naming2 %
- R-Group Decomposer< 1 %
- Speedy SMILES Enumerate Stereoisomers< 1 %
Joiner< 1 %- String Replacer< 1 %
- Molecular Properties< 1 %
RDKit Structure Normalizer< 1 %- RDKit Substructure Filter< 1 %
- Hydrogen Adder< 1 %
- Hydrogen Remover< 1 %
- SMILES Reader< 1 %
- Speedy SMILES Remove Broken Bonds Filter< 1 %
- Speedy SMILES Explicit Double Bond Geometry Filter< 1 %
- Speedy SMILES Clean Bonds< 1 %
- Speedy SMILES De-salt< 1 %
Loop End< 1 %Concatenate (Optional in)< 1 %- Number Rounder< 1 %
- Fingerprint Similarity< 1 %
- Hydrogen Manipulator< 1 %
- RDKit Add Hs< 1 %
- RDKit From Molecule< 1 %
- RDKit Remove Hs< 1 %
- Dearomatizer< 1 %
- Loop End< 1 %
- Molfile Reader< 1 %
- Mol2 Reader< 1 %
- Fingerprints< 1 %
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