Checks structures and tries to normalize them, if necessary. Structures that are normalized already
will appear in the first output table. Structures, which need to be normalized will be corrected
and also put in the first output table. Information about the normalization is made available as
bit mask (flags) as well as warning messages. Structures, which cannot be normalized or have been
normalized causing a certain warning flag that the user wants to treat as error are put in the
second table ("Failed Molecules").
The following flags and messages are currently used:
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