0 ×

Bowtie2AlignerSE

Generic Workflow Nodes for KNIME: NgsToolbox version 0.1.0.202003122006 by Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Options

mode
Alignment mode.
threads
Number of threads to use.

Input Ports

Icon
Input Bowtie index. [bt2]
Icon
Reads files. [fasta,fa,fastq,fq]

Output Ports

Icon
Output SAM file. [sam]

Views

Bowtie2AlignerSE Std Output
The text sent to standard out during the execution of Bowtie2AlignerSE.
Bowtie2AlignerSE Error Output
The text sent to standard error during the execution of Bowtie2AlignerSE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install NgsToolbox from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.