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This program determines for each read in the reference file if it has an entry in the provided sam files stating that it mapped. Afterwards a file is generated containing a row for each read which contains the read ID and the index of the mapped references.
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- Sam2matrix Std Output
- The text sent to standard out during the execution of Sam2matrix.
- Sam2matrix Error Output
- The text sent to standard error during the execution of Sam2matrix. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)
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