Metagenomics

/community/SeqAn/Metagenomics

This category contains 6 nodes.

GASiC 

Read correction node for the GASiC approach. The node takes a normalized read count vector and a similarity and computes a corrected abundance vector for […]

GASiCListReader 

Reads a list of GASiC mappings into a corresponding table.

GASiCReader 

Reads abbundance values from data files into a read abbundance table.

Sam2matrix 

This program outputs for each read the ids of references it maps to.

Slimm 

Species Level Identification of Microbes from Metagenomes

SlimmBuild 

gets a reduced taxonomic information given a multi-fasta file using accession numbers