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Metagenomics

/community/SeqAn/Metagenomics

This category contains 6 nodes.

GASiC

Read correction node for the GASiC approach. The node takes a normalized read count vector and a similarity and computes a corrected abundance vector for […]

GASiCListReader

Reads a list of GASiC mappings into a corresponding table.

GASiCReader

Reads abbundance values from data files into a read abbundance table.

Sam2matrix

This program outputs for each read the ids of references it maps to.

Slimm

Species Level Identification of Microbes from Metagenomes

SlimmBuild

gets a reduced taxonomic information given a multi-fasta file using accession numbers