Slimm

Options

version-check

Turn this option off to disable version update notifications of the application.

bin-width

Set the width of a single bin in neuclotides.

min-reads

Minimum number of matching reads to consider a reference present.

rank

The taxonomic rank of identification

cov-cut-off

the quantile of coverages to use as a cutoff smaller value means bigger threshold.

abundance-cut-off

do not report abundances below this value

directory

Input is a directory.

raw-output

Output raw reference statstics

coverage-output

Output raw coverage statstics

verbose

Enable verbose output.

Views

Slimm Std Output

The text sent to standard out during the execution of Slimm.

Slimm Error Output

The text sent to standard error during the execution of Slimm. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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