IconSlimm0 ×

Generic Workflow Nodes for KNIME: SeqAn version by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Species Level Identification of Microbes from Metagenomes

See http://www.seqan.de/projects/slimm for more information.

Investigates which microbial species are present from a BAM/SAM alignment file .

(c) Copyright 2014-2017 by Temesgen H. Dadi.

Web Documentation for Slimm


Turn this option off to disable version update notifications of the application.
directory containing various mapping files (names.dmp and nodes.dmp).
Set the width of a single bin in neuclotides.
Minimum number of matching reads to consider a reference present.
The taxonomic rank of identification
the quantile of coverages to use as a cutoff smaller value means bigger threshold.
Input is a directory.
Output raw reference statstics
Enable verbose output.

Input Ports


Output Ports

output path prefix. [*,Inactive]


Slimm Std Output
The text sent to standard out during the execution of Slimm.
Slimm Error Output
The text sent to standard error during the execution of Slimm. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: SeqAn from the following update site:

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