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SLIMM Species Level Identification of Microbes from Metagenomes
See http://www.seqan.de/projects/slimm for more information.
(c) Copyright 2014-2017 by Temesgen H. Dadi.
Options
Input Ports
- NCBI's names.dmp file which contains the mapping of taxaid to name []
- NCBI's nodes.dmp file which contains the taxonomic tree. []
- A multi-fasta file used as a reference for mapping [fq,fq.bgzf,fq.gz,fq.bz2,fastq,fastq.bgzf,fastq.gz,fastq.bz2,fa,fa.bgzf,fa.gz,fa.bz2,fasta,fasta.bgzf,fasta.gz,fasta.bz2,faa,faa.bgzf,faa.gz,faa.bz2,ffn,ffn.bgzf,ffn.gz,ffn.bz2,fna,fna.bgzf,fna.gz,fna.bz2,frn,frn.bgzf,frn.gz,frn.bz2,embl,embl.bgzf,embl.gz,embl.bz2,gbk,gbk.bgzf,gbk.gz,gbk.bz2,raw,raw.bgzf,raw.gz,raw.bz2,sam,sam.bgzf,sam.gz,sam.bz2,bam]
- one ore more accession to taxa id mapping files dowloaded from ncbi (separated by space.) []
Views
- SlimmBuild Std Output
- The text sent to standard out during the execution of SlimmBuild.
- SlimmBuild Error Output
- The text sent to standard error during the execution of SlimmBuild. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)
Workflows
- No workflows found
Links
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Developers
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