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QCExtractor

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261314 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Extracts a table attachment to a given qc parameter.

Web Documentation for QCExtractor

Options

version
Version of the tool that generated this parameters file.
qp
Target attachment qp.
name
If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input qcml file [qcML]
The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name. [mzML,opt.]

Output Ports

Output csv formatted table. [csv]

Views

QCExtractor Std Output
The text sent to standard out during the execution of QCExtractor.
QCExtractor Error Output
The text sent to standard error during the execution of QCExtractor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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Workflows

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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