QCExtractor

Extracts a table attachment to a given qc parameter.

Web Documentation for QCExtractor

Options

version
Version of the tool that generated this parameters file.
qp
Target attachment qp.
name
If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input qcml file [qcML]
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The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name. [mzML,opt.]

Output Ports

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Output csv formatted table. [csv]

Views

QCExtractor Std Output
The text sent to standard out during the execution of QCExtractor.
QCExtractor Error Output
The text sent to standard error during the execution of QCExtractor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Further Links

Developers

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