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QCExporter

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Will extract several qp from several run/sets in a tabular format.

Web Documentation for QCExporter

Options

version
Version of the tool that generated this parameters file.
names
The name of the target runs or sets to be exported from. If empty, from all will be exported.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input qcml file [qcML]
The mapping of the exported table's headers to the according qp cvs. The first row is considered containing the headers as for the exported the table. The second row is considered the according qp cv accessions of the qp to be exported. [csv]

Output Ports

Output csv formatted quality parameter. [csv]

Views

QCExporter Std Output
The text sent to standard out during the execution of QCExporter.
QCExporter Error Output
The text sent to standard error during the execution of QCExporter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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