TextExporter

Options

version

Version of the tool that generated this parameters file.

replacement

Used to replace occurrences of the separator in strings before writing, if 'quoting' is 'none'

quoting

Method for quoting of strings: 'none' for no quoting, 'double' for quoting with doubling of embedded quotes, 'escape' for quoting with backslash-escaping of embedded quotes

no_ids

Suppresses output of identification data.

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

minimal

Set this flag to write only three attributes: RT, m/z, and intensity.

add_metavalues

Add columns for meta values which occur with a certain frequency (0-100%). Set to -1 to omit meta values (default).

proteins_only

Set this flag if you want only protein information from an idXML file

peptides_only

Set this flag if you want only peptide information from an idXML file

protein_groups

Set this flag if you want to also write indist. group information from an idXML file

first_dim_rt

If this flag is set the first_dim RT of the peptide hits will also be printed (if present).

add_metavalues

Add columns for meta values of PeptideID (=spectrum) entries which occur with a certain frequency (0-100%). Set to -1 to omit meta values (default).

add_hit_metavalues

Add columns for meta values of PeptideHit (=PSM) entries which occur with a certain frequency (0-100%). Set to -1 to omit meta values (default).

add_protein_hit_metavalues

Add columns for meta values on protein level which occur with a certain frequency (0-100%). Set to -1 to omit meta values (default).

sorting_method

Sorting options can be combined. The precedence is: sort_by_size, sort_by_maps, sorting_method

sort_by_maps

Apply a stable sort by the covered maps, lexicographically

sort_by_size

Apply a stable sort by decreasing size (i.e., the number of elements)

add_metavalues

Add columns for ConsensusFeature meta values.

Views

TextExporter Std Output

The text sent to standard out during the execution of TextExporter.

TextExporter Error Output

The text sent to standard error during the execution of TextExporter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

• 00-test_workflowKNIME Hub
• 01-MaCProQCKNIME Hub
• KNIME_GNPSExportKNIME Hub
• Metabolite_IDOpenMS
• Metabolite_IDKNIME Hub
• Show all 9 workflows

Links

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Developers