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IDTextReader

Custom extensions for KNIME to read the output of the TextExporter. version 0.1.0.201810021716 by The OpenMS Team

This node can be used to read the output of the TextExporter tool into a KNIME table. TextExporter, when applied to an idXML file, writes out information on the identified peptides, namely RT, m/z, score, rank, sequence, charge, amino acids before and after, the type of score (q-value, PEP, ...), a search identifier and the protein accesions. All these information will be parsed into a KNIME table.

Input Ports

Incoming text file created with the TextExporter node.

Output Ports

Table containing the information on the identified peptides.

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.0
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Developers

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