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MzTabExporter

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Exports various XML formats to an mzTab file.

Web Documentation for MzTabExporter

Options

version
Version of the tool that generated this parameters file.
first_run_inference_only
Does the first IdentificationRun in the file only represent (protein) inference results? If so, read peptide information only from second to last runs.
opt_columns
Add optional columns which are not part of the mzTab standard.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input files used to generate the mzTab file. [featureXML,consensusXML,idXML,mzid,opt.]

Output Ports

Output file (mzTab) [mzTab]

Views

MzTabExporter Std Output
The text sent to standard out during the execution of MzTabExporter.
MzTabExporter Error Output
The text sent to standard error during the execution of MzTabExporter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.1
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