An OpenMS workflow for preprocessing raw data and creating an MGF file containing MS2 spectra, as well as a FeatureQuantificationTable.txt file containing a matrix of all features that have fragmentation patterns. Files needed for the workflow:
1) More than one centroid mzml files (node Input Files)
2) An empty idXML file
To use this workflow in KNIME, download it from the below URL and open it in KNIME:Download Workflow
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to firstname.lastname@example.org, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.