QCEmbedder

Attaches a table or an image to a given qc parameter.

Options

version: Version of the tool that generated this parameters file.
qp_att_acc: Defines the qp cv accession of the qp to which the table/image is attached.
cv_acc: Defines the cv accession of the attachment.
name: If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given.
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)

: Input qcml file [qcML,opt.]
: The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name. [mzML,opt.]
: If a plot image is to be attached to a qp, this has to be specified here. [PNG,opt.]
: If a table is to be attached to a qp, this has to be specified here. [csv,opt.]

QCEmbedder Std Output: The text sent to standard out during the execution of QCEmbedder.
QCEmbedder Error Output: The text sent to standard error during the execution of QCEmbedder. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.0.0.202307112039

On NodePit since: 2023-12-06

Last update: 2024-04-18

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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