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QCEmbedder

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Attaches a table or an image to a given qc parameter.

Web Documentation for QCEmbedder

Options

version
Version of the tool that generated this parameters file.
qp_att_acc
Defines the qp cv accession of the qp to which the table/image is attached.
cv_acc
Defines the cv accession of the attachment.
name
If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input qcml file [qcML,opt.]
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The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name. [mzML,opt.]
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If a plot image is to be attached to a qp, this has to be specified here. [PNG,opt.]
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If a table is to be attached to a qp, this has to be specified here. [csv,opt.]

Output Ports

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Output extended qcML file [qcML]

Views

QCEmbedder Std Output
The text sent to standard out during the execution of QCEmbedder.
QCEmbedder Error Output
The text sent to standard error during the execution of QCEmbedder. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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