QCShrinker

This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.

Options

version: Version of the tool that generated this parameters file.
qp_accessions: A list of cv accessions that should be removed. If empty, the usual suspects will be removed!
name: The name of the target run or set that contains the requested quality parameter.
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)

: Input qcml file [qcML]
: The file from which the name of the target run that contains the requested quality parameter is taken. This overrides the name parameter! [mzML,opt.]

QCShrinker Std Output: The text sent to standard out during the execution of QCShrinker.
QCShrinker Error Output: The text sent to standard error during the execution of QCShrinker. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.0.0.202307112039

On NodePit since: 2023-12-06

Last update: 2024-04-19

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.