QCShrinker

This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.

Web Documentation for QCShrinker

Options

version
Version of the tool that generated this parameters file.
qp_accessions
A list of cv accessions that should be removed. If empty, the usual suspects will be removed!
name
The name of the target run or set that contains the requested quality parameter.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input qcml file [qcML]
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The file from which the name of the target run that contains the requested quality parameter is taken. This overrides the name parameter! [mzML,opt.]

Output Ports

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Output extended/reduced qcML file [qcML]

Views

QCShrinker Std Output
The text sent to standard out during the execution of QCShrinker.
QCShrinker Error Output
The text sent to standard error during the execution of QCShrinker. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Further Links

Developers

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