FileInfo

Shows basic information about the file, such as data ranges and file type.

Options

version: Version of the tool that generated this parameters file.
in_type: input file type -- default: determined from file extension or content
m: Show meta information about the whole experiment
p: Shows data processing information
s: Computes a five-number statistics of intensities, qualities, and widths
d: Show detailed listing of all spectra and chromatograms (peak files only)
c: Check for corrupt data in the file (peak files only)
v: Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)
i: Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)

: input file [mzData,mzXML,mzML,sqMass,dta,dta2d,mgf,featureXML,consensusXML,idXML,pepXML,fid,mzid,trafoXML,fasta,pqp]

: Optional output file. If left out, the output is written to the command line. [txt]
: Second optional output file. Tab separated flat text file. [csv]

FileInfo Std Output: The text sent to standard out during the execution of FileInfo.
FileInfo Error Output: The text sent to standard error during the execution of FileInfo. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.0.0.202307112039

On NodePit since: 2023-12-06

Last update: 2024-04-25

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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