IDMerger

Merges several protein/peptide identification files into one file.

Web Documentation for IDMerger

Options

version
Version of the tool that generated this parameters file.
annotate_file_origin
Store the original filename in each protein/peptide identification (meta value: file_origin).
pepxml_protxml
Merge idXML files derived from a pepXML and corresponding protXML file. Exactly two input files are expected in this case. Not compatible with 'add_to'.
merge_proteins_add_PSMs
Merge all identified proteins by accession into one protein identification run but keep all the PSMs with updated links to potential new protein ID#s. Not compatible with 'add_to'.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

Icon
Input files separated by blanks [idXML]
Icon
Optional input file. IDs from 'in' are added to this file, but only if the (modified) peptide sequences are not present yet (considering only best hits per spectrum). [idXML,opt.]

Output Ports

Icon
Output file [idXML]

Views

IDMerger Std Output
The text sent to standard out during the execution of IDMerger.
IDMerger Error Output
The text sent to standard error during the execution of IDMerger. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Further Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.