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IDMerger

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261316 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Merges several protein/peptide identification files into one file.

Web Documentation for IDMerger

Options

version
Version of the tool that generated this parameters file.
annotate_file_origin
Store the original filename in each protein/peptide identification (meta value: file_origin).
pepxml_protxml
Merge idXML files derived from a pepXML and corresponding protXML file. Exactly two input files are expected in this case. Not compatible with 'add_to'.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input files separated by blanks [idXML]
Optional input file. IDs from 'in' are added to this file, but only if the (modified) peptide sequences are not present yet (considering only best hits per spectrum). [idXML,opt.]

Output Ports

Output file [idXML]

Views

IDMerger Std Output
The text sent to standard out during the execution of IDMerger.
IDMerger Error Output
The text sent to standard error during the execution of IDMerger. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.1
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Developers

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