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FileInfo

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261316 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Shows basic information about the file, such as data ranges and file type.

Web Documentation for FileInfo

Options

version
Version of the tool that generated this parameters file.
in_type
input file type -- default: determined from file extension or content
m
Show meta information about the whole experiment
p
Shows data processing information
s
Computes a five-number statistics of intensities, qualities, and widths
d
Show detailed listing of all spectra and chromatograms (peak files only)
c
Check for corrupt data in the file (peak files only)
v
Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)
i
Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

input file [mzData,mzXML,mzML,dta,dta2d,mgf,featureXML,consensusXML,idXML,pepXML,fid,mzid,trafoXML,fasta]

Output Ports

Optional output file. If left out, the output is written to the command line. [txt,Inactive]
Second optional output file. Tab separated flat text file. [csv,Inactive]

Views

FileInfo Std Output
The text sent to standard out during the execution of FileInfo.
FileInfo Error Output
The text sent to standard error during the execution of FileInfo. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.1
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