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ChEBI Retriever

EMBL-EBI extension for KNIME Workbench version 1.1.0.v201712111223 by EMBL-EBI

The database and ontology of Chemical Entities of Biological Interest (http://www.ebi.ac.uk/chebi/). This node uses ChEBI's SOAP web service to retrieve database records by ChEBI ids.

Options

ChEBI ID
Column containing ChEBI IDs as Strings (e.g., CHEBI:27732)
Get Complete Entity
Retrieves the complete entity including synonyms, database links and chemical structures, using the ChEBI identifier.
Get Ontology Parents
Retrieves the ontology parents of an entity including the relationship type, using the ChEBI identifier.
Get Ontology Children
Retrieves the ontology children of an entity including the relationship type, using the ChEBI identifier.
Get Ontology Children in Path
Retrieves the ontology children of an entity including the relationship type, using the ChEBI identifier.
Relationship Type
The ontological relationship type.
With Chemical Structures
If only results that contain a chemical structure should be retrieved.

Input Ports

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Table with ChEBI Ids

Output Ports

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Table with the retrieved results.

Best Friends (Incoming)

Best Friends (Outgoing)

Developers

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