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FastQReader

NGS related nodes for KNIME Workbench version 0.2.200.qualifier by Bernd Jagla, Institute Pasteur

Reads in FASTQ formatted files

This implementation uses the Biojava (1.7.1) implementation for reading the data

Options

file type
file type, possible options Solexa, Illumina, Sanger
file name
name of the input file
limit rows
Limit the number of rows to read. 0 = read all rows

Output Ports

Icon
FASTQ data

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KNIME NGS tools from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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