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FastQReader

Reads in FASTQ formatted files

This implementation uses the Biojava (1.7.1) implementation for reading the data

Options

file type: file type, possible options Solexa, Illumina, Sanger
file name: name of the input file
limit rows: Limit the number of rows to read. 0 = read all rows

Input Ports

This node has no input ports

Output Ports

: FASTQ data

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Installation

To use this node in KNIME, install the extension KNIME NGS tools from the below update site following our NodePit Product and Node Installation Guide:

v4.6

A zipped version of the software site can be downloaded here.

Plugin provider: Bernd Jagla, Institute Pasteur

Plugin version: 0.2.300.qualifier

On NodePit since: 2022-06-11

Last update: 2024-11-15

KNIME versions: From v3.6 to v4.6

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