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IO

NGS related I/O

This category contains 9 nodes.

BEDGraphWriter

writes bedGraph file based on chromosome, position value and offset

Bio Sequence Reader

Reads a FASTA, Genbank, uniport, embl, or INSDseq files into two columns: seq_name and sequence plus annotations

FastQReader

Reads in FASTQ formatted files

FastQWriter

writes FASTQ formatted data

FQCReader

Reads files such as the fastqc_data.txt file. Sections are stored in cells.

FQCWriter

Writes a text file similar to the data file from FASTQC

GenbankAnnotReader

This nodes reads a genbank file and retrieves the features that can be extracted from that file.

ROIReader

Reads a roi file: * ntab delimited file * n1st column chromosome name * n2nd col: start position * n3rd col: stop position * nn column (must be the […]

SAMReader

reads SAM/BAM files