IO

NGS related I/O

This category contains 9 nodes.

BEDGraphWriter 

writes bedGraph file based on chromosome, position value and offset

Bio Sequence Reader 

Reads a FASTA, Genbank, uniport, embl, or INSDseq files into two columns: seq_name and sequence plus annotations

FastQReader 

Reads in FASTQ formatted files

FastQWriter 

writes FASTQ formatted data

FQCReader 

Reads files such as the fastqc_data.txt file. Sections are stored in cells.

FQCWriter 

Writes a text file similar to the data file from FASTQC

GenbankAnnotReader 

This nodes reads a genbank file and retrieves the features that can be extracted from that file.

ROIReader 

Reads a roi file: * ntab delimited file * n1st column chromosome name * n2nd col: start position * n3rd col: stop position * nn column (must be the […]

SAMReader 

reads SAM/BAM files