NGS related I/O
This category contains 9 nodes.
writes bedGraph file based on chromosome, position value and offset
Reads a FASTA, Genbank, uniport, embl, or INSDseq files into two columns: seq_name and sequence plus annotations
Reads in FASTQ formatted files
writes FASTQ formatted data
Reads files such as the fastqc_data.txt file. Sections are stored in cells.
Writes a text file similar to the data file from FASTQC
This nodes reads a genbank file and retrieves the features that can be extracted from that file.
Reads a roi file: * ntab delimited file * n1st column chromosome name * n2nd col: start position * n3rd col: stop position * nn column (must be the […]
reads SAM/BAM files
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to firstname.lastname@example.org, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.