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SAMReader

NGS related nodes for KNIME Workbench version 0.2.200.qualifier by Bernd Jagla, Institute Pasteur

Reads in SAM/BAM formatted files

One output contains the data the other one contains the header section of the input file.

Options

file name
SAM or BAM formatted file
limit rows
for testing purposes it is sometimes useful to limit the number of rows to read in and thereby reducing the amount of time it takes to load data and execute the workflow. If this is set to zero all lines are being read in.
Validation level
if set to strict exceptions will be produced, if set to lenient warning, and if set to silent non-conforming lines will be read but you won't be notified.

Output Ports

Icon
Data table
Icon
Header of input file. One line = one row

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KNIME NGS tools from the following update site:

KNIME 4.2
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Developers

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