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GenbankAnnotReader

NGS related nodes for KNIME Workbench version 0.2.200.qualifier by Bernd Jagla, Institute Pasteur

Read in features from Genbank files\n Genbank files are not reliably consistantly formated, which makes it very difficult to write a parser that handles all scenarios. We provide here very generic parser that basically stratifies the genbank file into a table where each line represents something coherent. I.e. we combined multi line annotation into one row.

Options

input file name
Genbank file

Output Ports

Icon
Genbank feature table

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install KNIME NGS tools from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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