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IGVview
DeprecatedNGS related nodes for KNIME Workbench version 0.2.300.qualifier by Bernd Jagla, Institute Pasteur
For this to work IGV has to be opened. The correct reference genome
has to be loaded and the port has to be configured correctly.
See http://www.broadinstitute.org/igv/ for further information on
IGV.
Options
- HTTP address
- HTTP address of IGV installation. Usually 127.0.0.1 or localhost
- Port
- Port that is listening to request from IGV. This port can be set within IGV (view->preferences->advanced->Enable port)
- Chromosome
- Column with chromosome string. Has to be exactly like the one used in IGV.
- Start position
- Column name that holds the start position of the feature
- Stop position
- Column name that holds the stop position of the feature
Input Ports
Views
- TableWithLinks
- Table view with right click link to IGV
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Installation
To use this node in KNIME, install KNIME NGS tools from the following update site:
KNIME 4.4
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