IGVview

For this to work IGV has to be opened. The correct reference genome has to be loaded and the port has to be configured correctly.
See http://www.broadinstitute.org/igv/ for further information on IGV.

Options

HTTP address

HTTP address of IGV installation. Usually 127.0.0.1 or localhost

Port

Port that is listening to request from IGV. This port can be set within IGV (view->preferences->advanced->Enable port)

Chromosome

Column with chromosome string. Has to be exactly like the one used in IGV.

Start position

Column name that holds the start position of the feature

Stop position

Column name that holds the stop position of the feature

Input Ports

Chromosome, start, stop position

Views

TableWithLinks

Table view with right click link to IGV

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Installation

To use this node in KNIME, install KNIME NGS tools from the following update site:

Developers

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