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BEDGraphWriter

writes bedGraph file based on chromosome, position value and offset

combines rows with increasing chromosomal position (by 1) and same value into one output row.

Options

OutFile: Name of the output file.
Chromosome column: Column with Chromosome ID. This will be the first column in the output file.
Position column: This gives the position with the chromosome and is the basis for the start/stop position (col 2 and 3).
Value column: data value (column 4)
Offset: Off-set. This value is added (+) to the position column.

Input Ports

: Input table with chromosome, postion, and value column

Output Ports

This node has no output ports

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Installation

To use this node in KNIME, install the extension KNIME NGS tools from the below update site following our NodePit Product and Node Installation Guide:

v4.6

A zipped version of the software site can be downloaded here.

Plugin provider: Bernd Jagla, Institute Pasteur

Plugin version: 0.2.300.qualifier

On NodePit since: 2022-06-11

Last update: 2024-11-15

KNIME versions: From v3.6 to v4.6

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