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CellProfiler Pipeline Executor

KNIME CellProfiler Integration version 0.3.3.v201809040723 by Broad Institute / University of Konstanz

Lets you execute a CellProfiler pipeline on images in a table. Use 'CellProfiler Measurements To Table' node to extract the table from the results.


Pipeline file
The pipeline file to execute.
Image selection
The image to be used.

Input Ports

Table containing images.

Output Ports

Features calculated by the CellProfiler pipeline.

Best Friends (Incoming)

Best Friends (Outgoing)



To use this node in KNIME, install KNIME Image Processing - CellProfiler Integration from the following update site:


A zipped version of the software site can be downloaded here.

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