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04_​CellProfiler_​Speckles

CellProfiler Speckles

Run CellProfiler Speckles Example in KNIME.

General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see allcontents of this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with thenodes contained in this meta node.Workflow Description:Run CellProfiler Speckles Example in KNIME.see: http://cellprofiler.org/examples.htmlHints:Please set the path to your local CellProfiler installation at File > Preferences > KNIME > Image ProcessingPlugin > CellProfiler.You may want to increase your heap space as this processing flow needs a lot of memory.see: http://tech.knime.org/faq#q4_2 for detailsIf you need more information about other topics, browse our tutorials. For details seehttp://tech.knime.org/community/image-processinghttp://tech.knime.org/community/cellprofilerIf you have any questions/problems please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.1.2KNIME Image Processing 1.4.2KNIME CellProfiler Integration 0.2.1Workflow updated on 12/07/2016 Image Featureshx2a MISSING CellProfilerPipeline Executor MISSING CellProfilerMeasurements To Table MISSING CellProfilerMeasurements To Table Prepare Input Image Reader General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see allcontents of this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with thenodes contained in this meta node.Workflow Description:Run CellProfiler Speckles Example in KNIME.see: http://cellprofiler.org/examples.htmlHints:Please set the path to your local CellProfiler installation at File > Preferences > KNIME > Image ProcessingPlugin > CellProfiler.You may want to increase your heap space as this processing flow needs a lot of memory.see: http://tech.knime.org/faq#q4_2 for detailsIf you need more information about other topics, browse our tutorials. For details seehttp://tech.knime.org/community/image-processinghttp://tech.knime.org/community/cellprofilerIf you have any questions/problems please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.1.2KNIME Image Processing 1.4.2KNIME CellProfiler Integration 0.2.1Workflow updated on 12/07/2016 Image Featureshx2a MISSING CellProfilerPipeline Executor MISSING CellProfilerMeasurements To Table MISSING CellProfilerMeasurements To Table Prepare Input Image Reader

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Extensions

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: dietzc
Created at: 2015-02-20
On NodePit since: 2020-11-19
Last update: 2020-11-21
Created with KNIME version: v4.2.0

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