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BowtieAlignerPE

bowtie

Web Documentation for BowtieAlignerPE

Options

minins: minimum insert size for paired-end alignment
maxins: maximum insert size for paired-end alignment

Input Ports

: Input Bowtie index. [ebwt]
: Left reads files. [fasta,fa,fastq,fq]
: Right reads file. [fasta,fa,fastq,fq]

Output Ports

: Output SAM File. [sam]
: Output SAM file. [sam]

Popular Predecessors

Popular Successors

Views

BowtieAlignerPE Std Output: The text sent to standard out during the execution of BowtieAlignerPE.
BowtieAlignerPE Error Output: The text sent to standard error during the execution of BowtieAlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Developers

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Installation

To use this node in KNIME, install the extension NgsToolbox from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Plugin version: 0.1.0.202003122006

On NodePit since: 2022-12-06

Last update: 2024-11-09

KNIME versions: From v3.6 to v4.7

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