This node is currently not available in KNIME v5.2 — instead we’re showing this page for KNIME v4.7. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

BowtieAlignerPE

bowtie

Web Documentation for BowtieAlignerPE

Options

minins: minimum insert size for paired-end alignment
maxins: maximum insert size for paired-end alignment

Input Ports

: Input Bowtie index. [ebwt]
: Left reads files. [fasta,fa,fastq,fq]
: Right reads file. [fasta,fa,fastq,fq]

Output Ports

: Output SAM File. [sam]
: Output SAM file. [sam]

Popular Predecessors

Popular Successors

Views

BowtieAlignerPE Std Output: The text sent to standard out during the execution of BowtieAlignerPE.
BowtieAlignerPE Error Output: The text sent to standard error during the execution of BowtieAlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

No workflows found

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

Installation

To use this node in KNIME, install the extension NgsToolbox from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Plugin version: 0.1.0.202003122006

On NodePit since: 2022-12-06

Last update: 2024-04-20

KNIME versions: From v3.6 to v4.7

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!