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BowtieAlignerPE

Generic Workflow Nodes for KNIME: NgsToolbox version 0.1.0.202003122006 by Freie Universitaet Berlin, Universitaet Tuebingen, and the NgsToolbox Team

Options

minins
minimum insert size for paired-end alignment
maxins
maximum insert size for paired-end alignment

Input Ports

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Input Bowtie index. [ebwt]
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Left reads files. [fasta,fa,fastq,fq]
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Right reads file. [fasta,fa,fastq,fq]

Output Ports

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Output SAM File. [sam]
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Output SAM file. [sam]

Views

BowtieAlignerPE Std Output
The text sent to standard out during the execution of BowtieAlignerPE.
BowtieAlignerPE Error Output
The text sent to standard error during the execution of BowtieAlignerPE. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install NgsToolbox from the following update site:

KNIME 4.2
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Developers

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