0 ×

FeatureCountsMerger

IBIS Helmholtz-Node extension for KNIME Workbench version 1.8.1.201707071203 by IBIS KNIME Team

The FeatureCountsMerger can be used to merge the results of multiple feature count runs.
The node takes as input a list of feature count files and returns a table with the merged counts.

Options

Output
Set the path to the file where the merged counts should be stored.
Header format options
Remove the path of the file in the header: Choose whether to only take the name of the file as header caption.
Remove the ending of the file in the header: Choose whether to remove the ending of the file in the header caption.

Input Ports

Icon
Paths to FeatureCountFiles are expected to be in the first column.

Output Ports

Icon
Merged count matrix which is written to the specified output file.
Row names: IDs of features.
Column headers are the names of the samples.
Cell 0...n: Count of features in the samples.

Views

STDOUT / STDERR
The node offers a direct view of its standard out and the standard error of the tool.

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install KNIME4NGS from the following update site:

KNIME 4.3

You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.