KNIME4NGS

Descriptionhttp://ibisngs.github.io/knime4ngs

Knime4NGS is a set of custom KNIME nodes, designed for processing large next generation sequencing datasets. The nodes wrap functionalities of popular command line tools like BWA, Samtools and GATK and allow an easy creation of comprehensive NGS KNIME workflows.

Modules

• BundleIBIS Helmholtz-Node extension for KNIME Workbench
• OtherKNIME4NGS

Nodes

• Bcftools
• Bowtie2
• BWA
• CombineGVCFs
• CombineVCFs
• Show all 44 nodes

Workflows

• KNIME4NGS_Test_DiffExpressionKnime4NGS
• KNIME4NGS_Test_VarCallingKnime4NGS

Links

• No links available

Copyrighthttp://www.gnu.org/licenses

Copyright (C) 2016 the Knime4NGS contributors. This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Licensehttp://www.gnu.org/licenses

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.