SnpEff

SnpEff annotates and predicts the effects of genetic variants.
Source: http://snpeff.sourceforge.net/SnpEff.html

Options

Database name

In order to produce the annotation, SnpEff requires a database.
For more information, see http://snpeff.sourceforge.net/SnpEff.html

Use database directory specified in config file?

Uncheck this option, if you want to use another database directory. If the chosen database is not available, it will be downloaded. Note, that downloading may take some time depending on the size of the database.

Path to BED file

Only analyze changes that intersect with the intervals specified in this BED file.

Java Memory

Set the maximum Java heap size in GB.

Further options

Set additional command line flags.

Results filter

Do not show ... changes

Choose regions in which variants will not be annotated.

Preference page

HTE

Set a threshold for repeated execution. Only used if HTE is enabled in the preference page.

Path to snpEff.jar

Set the path to the snpEff jar file.

Views

STDOUT / STDERR

STDOUT / STDERR

STDOUT / STDERR

The node offers a direct view of its standard out and the standard error of the tool.

Workflows

• No workflows found

Links

• No links available

Developers