PDB Downloader

This node, and the corresponding source node, allows the downloading of structure and sequence files from the RCSB PDB. The formats supported are:

• PDB
• mmCIF
• Structure Factors
• PDBML/XML (PDBx)
• FASTA Format Sequence

PDB files are cast as PDB cells, and PDBML as XML cells. No checking the the structure IDs is carried out - invalid IDs will return cells containing missing values. WARNING - the PDBx option can result in very large tables!

This node was developed by Vernalis (Cambridge, UK). For feedback and more information, please contact knime@vernalis.com